Adedeji, Adeyemi O., Bruno Marchand, Aartjan J. W. Te Velthuis, Eric J. Snijder, Susan Weiss, Robert L. Eoff, Kamalendra Singh, and Stefan G. Sarafianos. 2012. “Mechanism of Nucleic Acid Unwinding by SARS-CoV Helicase.” PloS One 7 (5): e36521.

Adedeji, Adeyemi O., Kamalendra Singh, Ademola Kassim, Christopher M. Coleman, Ruth Elliott, Susan R. Weiss, Matthew B. Frieman, and Stefan G. Sarafianos. 2014. “Evaluation of SSYA10-001 as a Replication Inhibitor of Severe Acute Respiratory Syndrome, Mouse Hepatitis, and Middle East Respiratory Syndrome Coronaviruses.” Antimicrobial Agents and Chemotherapy 58 (8): 4894–98.

Agostini, Maria L., Erica L. Andres, Amy C. Sims, Rachel L. Graham, Timothy P. Sheahan, Xiaotao Lu, Everett Clinton Smith, et al. 2018. “Coronavirus Susceptibility to the Antiviral Remdesivir (GS-5734) Is Mediated by the Viral Polymerase and the Proofreading Exoribonuclease.” mBio. https://doi.org/10.1128/mbio.00221-18.

Agrawal, Tanupriya, Gaurav K. Gupta, and Devendra K. Agrawal. 2012. “Vitamin D Deficiency Decreases the Expression of VDR and Prohibitin in the Lungs of Mice with Allergic Airway Inflammation.” Experimental and Molecular Pathology. https://doi.org/10.1016/j.yexmp.2012.04.004.

Alam, Intikhab, Allan Kamau, Maxat Kulmanov, Stefan T. Arold, Arnab Pain, Takashi Gojobori, and Carlos M. Duarte. n.d. “Functional Pangenome Analysis Suggests Inhibition of the Protein E as a Readily Available Therapy for COVID-2019.” https://doi.org/10.1101/2020.02.17.952895.

Alvarez, Enrique, Marta L. DeDiego, Jose L. Nieto-Torres, Jose M. Jiménez-Guardeño, Laura Marcos-Villar, and Luis Enjuanes. 2010. “The Envelope Protein of Severe Acute Respiratory Syndrome Coronavirus Interacts with the Non-Structural Protein 3 and Is Ubiquitinated.” Virology 402 (2): 281–91.

Anand, Kanchan, John Ziebuhr, Parvesh Wadhwani, Jeroen R. Mesters, and Rolf Hilgenfeld. 2003. “Coronavirus Main Proteinase (3CLpro) Structure: Basis for Design of Anti-SARS Drugs.” Science 300 (5626): 1763–67.

Angelini, Megan M., Marzieh Akhlaghpour, Benjamin W. Neuman, and Michael J. Buchmeier. 2013. “Severe Acute Respiratory Syndrome Coronavirus Nonstructural Proteins 3, 4, and 6 Induce Double-Membrane Vesicles.” mBio 4 (4). https://doi.org/10.1128/mBio.00524-13.

Armstrong, John, Heiner Niemann, Sjef Smeekens, Peter Rottier, and Graham Warren. 1984. “Sequence and Topology of a Model Intracellular Membrane Protein, E1 Glycoprotein, from a Coronavirus.” Nature. https://doi.org/10.1038/308751a0.

Baliji, S., S. A. Cammer, B. Sobral, and S. C. Baker. 2009. “Detection of Nonstructural Protein 6 in Murine Coronavirus-Infected Cells and Analysis of the Transmembrane Topology by Using Bioinformatics and Molecular Approaches.” Journal of Virology. https://doi.org/10.1128/jvi.00254-09.

Beachboard, Dia C., Jordan M. Anderson-Daniels, and Mark R. Denison. 2015. “Mutations across Murine Hepatitis Virus nsp4 Alter Virus Fitness and Membrane Modifications.” Journal of Virology 89 (4): 2080–89.

Beachboard, Dia C., Xiaotao Lu, Susan C. Baker, and Mark R. Denison. 2013. “Murine Hepatitis Virus nsp4 N258T Mutants Are Not Temperature-Sensitive.” Virology. https://doi.org/10.1016/j.virol.2012.10.001.

Bickford, Lincoln C., Elena Mossessova, and Jonathan Goldberg. 2004. “A Structural View of the COPII Vesicle Coat.” Current Opinion in Structural Biology 14 (2): 147–53.

Boon, Johan A. den, and Paul Ahlquist. 2010. “Organelle-like Membrane Compartmentalization of Positive-Strand RNA Virus Replication Factories.” Annual Review of Microbiology 64: 241–56.

Bouvet, Mickaël, Claire Debarnot, Isabelle Imbert, Barbara Selisko, Eric J. Snijder, Bruno Canard, and Etienne Decroly. 2010. “In Vitro Reconstitution of SARS-Coronavirus mRNA Cap Methylation.” PLoS Pathogens 6 (4): e1000863.

Bouvet, Mickaël, Isabelle Imbert, Lorenzo Subissi, Laure Gluais, Bruno Canard, and Etienne Decroly. 2012. “RNA 3’-End Mismatch Excision by the Severe Acute Respiratory Syndrome Coronavirus Nonstructural Protein nsp10/nsp14 Exoribonuclease Complex.” Proceedings of the National Academy of Sciences of the United States of America 109 (24): 9372–77.

Bouvet, Mickaël, Adrien Lugari, Clara C. Posthuma, Jessika C. Zevenhoven, Stéphanie Bernard, Stéphane Betzi, Isabelle Imbert, et al. 2014. “Coronavirus Nsp10, a Critical Co-Factor for Activation of Multiple Replicative Enzymes.” The Journal of Biological Chemistry 289 (37): 25783–96.

Briguglio, Irene, Sandra Piras, Paola Corona, and Antonio Carta. 2011. “Inhibition of RNA Helicases of ssRNA Virus Belonging to Flaviviridae, Coronaviridae and Picornaviridae Families.” International Journal of Medicinal Chemistry. https://doi.org/10.1155/2011/213135.

Brunn, Albrecht von, Carola Teepe, Jeremy C. Simpson, Rainer Pepperkok, Caroline C. Friedel, Ralf Zimmer, Rhonda Roberts, Ralph Baric, and Jürgen Haas. 2007. “Analysis of Intraviral Protein-Protein Interactions of the SARS Coronavirus ORFeome.” PloS One 2 (5): e459.

Calvo, Enrique, Marta L. DeDiego, Pilar García, Juan A. López, Pilar Pérez-Breña, and Ana Falcón. 2012. “Severe Acute Respiratory Syndrome Coronavirus Accessory Proteins 6 and 9b Interact in Vivo.” Virus Research 169 (1): 282–88.

Castaño-Rodriguez, Carlos, Jose M. Honrubia, Javier Gutiérrez-Álvarez, Marta L. DeDiego, Jose L. Nieto-Torres, Jose M. Jimenez-Guardeño, Jose A. Regla-Nava, et al. 2018. “Role of Severe Acute Respiratory Syndrome Coronavirus Viroporins E, 3a, and 8a in Replication and Pathogenesis.” mBio. https://doi.org/10.1128/mbio.02325-17.

Chan, Chak-Ming, Cheuk-Wing Ma, Wood-Yee Chan, and Ho Yin Edwin Chan. 2007. “The SARS-Coronavirus Membrane Protein Induces Apoptosis through Modulating the Akt Survival Pathway.” Archives of Biochemistry and Biophysics459 (2): 197–207.

Chan, Chak-Ming, Ho Tsoi, Wing-Man Chan, Shenyu Zhai, Ching-On Wong, Xiaoqiang Yao, Wood-Yee Chan, Stephen Kwok-Wing Tsui, and Ho Yin Edwin Chan. 2009. “The Ion Channel Activity of the SARS-Coronavirus 3a Protein Is Linked to Its pro-Apoptotic Function.” The International Journal of Biochemistry & Cell Biology 41 (11): 2232–39.

Chang, Chung-Ke, Ming-Hon Hou, Chi-Fon Chang, Chwan-Deng Hsiao, and Tai-Huang Huang. 2014. “The SARS Coronavirus Nucleocapsid Protein – Forms and Functions.” Antiviral Research. https://doi.org/10.1016/j.antiviral.2013.12.009.

Chang, Chung-Ke, Yen-Lan Hsu, Yuan-Hsiang Chang, Fa-An Chao, Ming-Chya Wu, Yu-Shan Huang, Chin-Kun Hu, and Tai-Huang Huang. 2009. “Multiple Nucleic Acid Binding Sites and Intrinsic Disorder of Severe Acute Respiratory Syndrome Coronavirus Nucleocapsid Protein: Implications for Ribonucleocapsid Protein Packaging.” Journal of Virology 83 (5): 2255–64.

Cheng, Weijia, Shiyou Chen, Ruiling Li, Yu Chen, Min Wang, and Deyin Guo. 2015. “Severe Acute Respiratory Syndrome Coronavirus Protein 6 Mediates Ubiquitin-Dependent Proteosomal Degradation of N-Myc (and STAT) Interactor.” Virologica Sinica 30 (2): 153–61.

Chinese SARS Molecular Epidemiology Consortium. 2004. “Molecular Evolution of the SARS Coronavirus during the Course of the SARS Epidemic in China.” Science 303 (5664): 1666–69.

Chiu, Rossa W. K., Stephen S. C. Chim, Yu-Kwan Tong, Kitty S. C. Fung, Paul K. S. Chan, Guo-Ping Zhao, and Y. M. Dennis Lo. 2005. “Tracing SARS-Coronavirus Variant with Large Genomic Deletion.” Emerging Infectious Diseases 11 (1): 168–70.

Clementz, Mark A., Amornrat Kanjanahaluethai, Timothy E. O’Brien, and Susan C. Baker. 2008. “Mutation in Murine Coronavirus Replication Protein nsp4 Alters Assembly of Double Membrane Vesicles.” Virology 375 (1): 118–29.

Cohen, Jennifer R., Lisa D. Lin, and Carolyn E. Machamer. 2011. “Identification of a Golgi Complex-Targeting Signal in the Cytoplasmic Tail of the Severe Acute Respiratory Syndrome Coronavirus Envelope Protein.” Journal of Virology 85 (12): 5794–5803.

Cornillez-Ty, C. T., L. Liao, J. R. Yates, P. Kuhn, and M. J. Buchmeier. 2009. “Severe Acute Respiratory Syndrome Coronavirus Nonstructural Protein 2 Interacts with a Host Protein Complex Involved in Mitochondrial Biogenesis and Intracellular Signaling.” Journal of Virology. https://doi.org/10.1128/jvi.00842-09.

Cottam, Eleanor M., Helena J. Maier, Maria Manifava, Laura C. Vaux, Priya Chandra-Schoenfelder, Wilhelm Gerner, Paul Britton, Nick T. Ktistakis, and Tom Wileman. 2011. “Coronavirus nsp6 Proteins Generate Autophagosomes from the Endoplasmic Reticulum via an Omegasome Intermediate.” Autophagy 7 (11): 1335–47.

Daczkowski, Courtney M., John V. Dzimianski, Jozlyn R. Clasman, Octavia Goodwin, Andrew D. Mesecar, and Scott D. Pegan. 2017. “Structural Insights into the Interaction of Coronavirus Papain-Like Proteases and Interferon-Stimulated Gene Product 15 from Different Species.” Journal of Molecular Biology 429 (11): 1661–83.

Dayer, Mohammad Reza, Sara Taleb-Gassabi, and Mohammad Saaid Dayer. 2017. “Lopinavir; A Potent Drug against Coronavirus Infection: Insight from Molecular Docking Study.” Archives of Clinical Infectious Diseases. https://doi.org/10.5812/archcid.13823.

Decroly, Etienne, Claire Debarnot, François Ferron, Mickael Bouvet, Bruno Coutard, Isabelle Imbert, Laure Gluais, et al. 2011. “Crystal Structure and Functional Analysis of the SARS-Coronavirus RNA Cap 2′-O-Methyltransferase nsp10/nsp16 Complex.” PLoS Pathogens. https://doi.org/10.1371/journal.ppat.1002059.

Deming, D. J., R. L. Graham, M. R. Denison, and R. S. Baric. 2007. “Processing of Open Reading Frame 1a Replicase Proteins nsp7 to nsp10 in Murine Hepatitis Virus Strain A59 Replication.” Journal of Virology. https://doi.org/10.1128/jvi.00017-07.

Deng, Xufang, Matthew Hackbart, Robert C. Mettelman, Amornrat O’Brien, Anna M. Mielech, Guanghui Yi, C. Cheng Kao, and Susan C. Baker. 2017. “Coronavirus Nonstructural Protein 15 Mediates Evasion of dsRNA Sensors and Limits Apoptosis in Macrophages.” Proceedings of the National Academy of Sciences of the United States of America 114 (21): E4251–60.

Denison, Mark R., Rachel L. Graham, Eric F. Donaldson, Lance D. Eckerle, and Ralph S. Baric. 2011. “Coronaviruses: An RNA Proofreading Machine Regulates Replication Fidelity and Diversity.” RNA Biology 8 (2): 270–79.

Donaldson, E. F., R. L. Graham, A. C. Sims, M. R. Denison, and R. S. Baric. 2007. “Analysis of Murine Hepatitis Virus Strain A59 Temperature-Sensitive Mutant TS-LA6 Suggests That nsp10 Plays a Critical Role in Polyprotein Processing.” Journal of Virology. https://doi.org/10.1128/jvi.00049-07.

Eckerle, Lance D., Michelle M. Becker, Rebecca A. Halpin, Kelvin Li, Eli Venter, Xiaotao Lu, Sana Scherbakova, et al. 2010. “Infidelity of SARS-CoV Nsp14-Exonuclease Mutant Virus Replication Is Revealed by Complete Genome Sequencing.” PLoS Pathogens 6 (5): e1000896.

Eckerle, Lance D., Xiaotao Lu, Steven M. Sperry, Leena Choi, and Mark R. Denison. 2007. “High Fidelity of Murine Hepatitis Virus Replication Is Decreased in nsp14 Exoribonuclease Mutants.” Journal of Virology 81 (22): 12135–44.

Egloff, M-P, M. -P. Egloff, F. Ferron, V. Campanacci, S. Longhi, C. Rancurel, H. Dutartre, et al. 2004. “The Severe Acute Respiratory Syndrome-Coronavirus Replicative Protein nsp9 Is a Single-Stranded RNA-Binding Subunit Unique in the RNA Virus World.” Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.0307877101.

Fang, Shouguo, Bo Chen, Felicia P. L. Tay, Beng Sern Ng, and Ding Xing Liu. 2007. “An Arginine-to-Proline Mutation in a Domain with Undefined Functions within the Helicase Protein (Nsp13) Is Lethal to the Coronavirus Infectious Bronchitis Virus in Cultured Cells.” Virology. https://doi.org/10.1016/j.virol.2006.08.020.

Fang, Xiaonan, Jinrong Gao, Hong Zheng, Baozong Li, Lingbao Kong, Yijuan Zhang, Wei Wang, Yingchun Zeng, and Linbai Ye. 2007. “The Membrane Protein of SARS-CoV Suppresses NF-kappaB Activation.” Journal of Medical Virology 79 (10): 1431–39.

Fehr, Anthony R., and Stanley Perlman. 2015. “Coronaviruses: An Overview of Their Replication and Pathogenesis.” Methods in Molecular Biology  1282: 1–23.

Fielding, Burtram C., Vithiagaran Gunalan, Timothy H. P. Tan, Chih-Fong Chou, Shuo Shen, Sehaam Khan, Seng Gee Lim, Wanjin Hong, and Yee-Joo Tan. 2006. “Severe Acute Respiratory Syndrome Coronavirus Protein 7a Interacts with hSGT.” Biochemical and Biophysical Research Communications 343 (4): 1201–8.

Fischer, Françoise, Carola F. Stegen, Paul S. Masters, and William A. Samsonoff. 1998. “Analysis of Constructed E Gene Mutants of Mouse Hepatitis Virus Confirms a Pivotal Role for E Protein in Coronavirus Assembly.” Journal of Virology. https://doi.org/10.1128/jvi.72.10.7885-7894.1998.

Frieman, Matthew, Boyd Yount, Mark Heise, Sarah A. Kopecky-Bromberg, Peter Palese, and Ralph S. Baric. 2007. “Severe Acute Respiratory Syndrome Coronavirus ORF6 Antagonizes STAT1 Function by Sequestering Nuclear Import Factors on the Rough Endoplasmic reticulum/Golgi Membrane.” Journal of Virology 81 (18): 9812–24.

Gadlage, Mark J., Jennifer S. Sparks, Dia C. Beachboard, Reagan G. Cox, Joshua D. Doyle, Christopher C. Stobart, and Mark R. Denison. 2010. “Murine Hepatitis Virus Nonstructural Protein 4 Regulates Virus-Induced Membrane Modifications and Replication Complex Function.” Journal of Virology 84 (1): 280–90.

Geng, Hua, Yuet-Man Liu, Wai-Sing Chan, Anthony Wing-Ip Lo, Deborah Mun-Yee Au, Mary Miu-Yee Waye, and Yuan-Yuan Ho. 2005. “The Putative Protein 6 of the Severe Acute Respiratory Syndrome-Associated Coronavirus: Expression and Functional Characterization.” FEBS Letters 579 (30): 6763–68.

Gordon, Calvin J., Egor P. Tchesnokov, Joy Y. Feng, Danielle P. Porter, and Matthias Gotte. 2020. “The Antiviral Compound Remdesivir Potently Inhibits RNA-Dependent RNA Polymerase from Middle East Respiratory Syndrome Coronavirus.” The Journal of Biological Chemistry, February. https://doi.org/10.1074/jbc.AC120.013056.

Gordon, David E., Gwendolyn M. Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Matthew J. O’Meara, Jeffrey Z. Guo, et al. 2020. “A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing.” bioRxiv. https://doi.org/10.1101/2020.03.22.002386.

Graham, Rachel L., Amy C. Sims, Sarah M. Brockway, Ralph S. Baric, and Mark R. Denison. 2005. “The nsp2 Replicase Proteins of Murine Hepatitis Virus and Severe Acute Respiratory Syndrome Coronavirus Are Dispensable for Viral Replication.” Journal of Virology 79 (21): 13399–411.

Guan, Y., B. J. Zheng, Y. Q. He, X. L. Liu, Z. X. Zhuang, C. L. Cheung, S. W. Luo, et al. 2003. “Isolation and Characterization of Viruses Related to the SARS Coronavirus from Animals in Southern China.” Science 302 (5643): 276–78.

Hagemeijer, Marne C., Iryna Monastyrska, Janice Griffith, Peter van der Sluijs, Jarno Voortman, Paul M. van Bergen en Henegouwen, Annelotte M. Vonk, Peter J. M. Rottier, Fulvio Reggiori, and Cornelis A. M. de Haan. 2014. “Membrane Rearrangements Mediated by Coronavirus Nonstructural Proteins 3 and 4.” Virology 458-459 (June): 125–35.

Hagemeijer, Marne C., Monique H. Verheije, Mustafa Ulasli, Indra A. Shaltiël, Lisa A. de Vries, Fulvio Reggiori, Peter J. M. Rottier, and Cornelis A. M. de Haan. 2010. “Dynamics of Coronavirus Replication-Transcription Complexes.” Journal of Virology 84 (4): 2134–49.

Hernando-Rodríguez, Blanca, and Marta Artal-Sanz. 2018. “Mitochondrial Quality Control Mechanisms and the PHB (Prohibitin) Complex.” Cells  7 (12). https://doi.org/10.3390/cells7120238.

He, Runtao, Frederick Dobie, Melissa Ballantine, Andrew Leeson, Yan Li, Nathalie Bastien, Todd Cutts, et al. 2004. “Analysis of Multimerization of the SARS Coronavirus Nucleocapsid Protein.” Biochemical and Biophysical Research Communications 316 (2): 476–83.

He, Runtao, Andrew Leeson, Melissa Ballantine, Anton Andonov, Lindsay Baker, Frederick Dobie, Yan Li, et al. 2004. “Characterization of Protein–protein Interactions between the Nucleocapsid Protein and Membrane Protein of the SARS Coronavirus.” Virus Research. https://doi.org/10.1016/j.virusres.2004.05.002.

Hsieh, Ping-Kun, Shin C. Chang, Chu-Chun Huang, Ting-Ting Lee, Ching-Wen Hsiao, Yi-Hen Kou, I-Yin Chen, Chung-Ke Chang, Tai-Huang Huang, and Ming-Fu Chang. 2005. “Assembly of Severe Acute Respiratory Syndrome Coronavirus RNA Packaging Signal into Virus-like Particles Is Nucleocapsid Dependent.” Journal of Virology 79 (22): 13848–55.

Huang, Cheng, C. J. Peters, and Shinji Makino. 2007. “Severe Acute Respiratory Syndrome Coronavirus Accessory Protein 6 Is a Virion-Associated Protein and Is Released from 6 Protein-Expressing Cells.” Journal of Virology 81 (10): 5423–26.

Huang, Yue, Zhi-Yong Yang, Wing-Pui Kong, and Gary J. Nabel. 2004. “Generation of Synthetic Severe Acute Respiratory Syndrome Coronavirus Pseudoparticles: Implications for Assembly and Vaccine Production.” Journal of Virology 78 (22): 12557–65.

Hu, Dan, Changqiang Zhu, Lele Ai, Ting He, Yi Wang, Fuqiang Ye, Lu Yang, et al. 2018. “Genomic Characterization and Infectivity of a Novel SARS-like Coronavirus in Chinese Bats.” Emerging Microbes & Infections 7 (1): 154.

Hu, Yongwu, Jie Wen, Lin Tang, Haijun Zhang, Xiaowei Zhang, Yan Li, Jing Wang, et al. 2003. “The M Protein of SARS-CoV: Basic Structural and Immunological Properties.” Genomics, Proteomics & Bioinformatics. https://doi.org/10.1016/s1672-0229(03)01016-7.

Ivanov, Konstantin A., and John Ziebuhr. 2004. “Human Coronavirus 229E Nonstructural Protein 13: Characterization of Duplex-Unwinding, Nucleoside Triphosphatase, and RNA 5’-Triphosphatase Activities.” Journal of Virology 78 (14): 7833–38.

Jia, Zhihui, Liming Yan, Zhilin Ren, Lijie Wu, Jin Wang, Jing Guo, Litao Zheng, et al. 2019. “Delicate Structural Coordination of the Severe Acute Respiratory Syndrome Coronavirus Nsp13 upon ATP Hydrolysis.” Nucleic Acids Research 47 (12): 6538–50.

Jimenez-Guardeño, Jose M., Jose L. Nieto-Torres, Marta L. DeDiego, Jose A. Regla-Nava, Raul Fernandez-Delgado, Carlos Castaño-Rodriguez, and Luis Enjuanes. 2014. “The PDZ-Binding Motif of Severe Acute Respiratory Syndrome Coronavirus Envelope Protein Is a Determinant of Viral Pathogenesis.” PLoS Pathogens 10 (8): e1004320.

Johnson, Margaret A., Amarnath Chatterjee, Benjamin W. Neuman, and Kurt Wüthrich. 2010. “SARS Coronavirus Unique Domain: Three-Domain Molecular Architecture in Solution and RNA Binding.” Journal of Molecular Biology. https://doi.org/10.1016/j.jmb.2010.05.027.

Jones, Philip, David Binns, Hsin-Yu Chang, Matthew Fraser, Weizhong Li, Craig McAnulla, Hamish McWilliam, et al. 2014. “InterProScan 5: Genome-Scale Protein Function Classification.” Bioinformatics  30 (9): 1236–40.

Kamitani, Wataru, Cheng Huang, Krishna Narayanan, Kumari G. Lokugamage, and Shinji Makino. 2009. “A Two-Pronged Strategy to Suppress Host Protein Synthesis by SARS Coronavirus Nsp1 Protein.” Nature Structural & Molecular Biology. https://doi.org/10.1038/nsmb.1680.

Kanzawa, Noriyuki, Kazuo Nishigaki, Takaya Hayashi, Yuichi Ishii, Souichi Furukawa, Ayako Niiro, Fumihiko Yasui, et al. 2006. “Augmentation of Chemokine Production by Severe Acute Respiratory Syndrome Coronavirus 3a/X1 and 7a/X4 Proteins through NF-κB Activation.” FEBS Letters. https://doi.org/10.1016/j.febslet.2006.11.046.

Kathiria, Arwa S., Lindsay D. Butcher, Linda A. Feagins, Rhonda F. Souza, C. Richard Boland, and Arianne L. Theiss. 2012. “Prohibitin 1 Modulates Mitochondrial Stress-Related Autophagy in Human Colonic Epithelial Cells.” PloS One 7 (2): e31231.

Kim, Youngchang, Robert Jedrzejczak, Natalia I. Maltseva, Michael Endres, Adam Godzik, Karolina Michalska, and Andrzej Joachimiak. 2020. “Crystal Structure of Nsp15 Endoribonuclease NendoU from SARS-CoV-2.” Molecular Biology. bioRxiv.

Kirchdoerfer, Robert N., and Andrew B. Ward. 2019. “Structure of the SARS-CoV nsp12 Polymerase Bound to nsp7 and nsp8 Co-Factors.” Nature Communications 10 (1): 2342.

Knoops, Kèvin, Marjolein Kikkert, Sjoerd H. E. van den Worm, Jessika C. Zevenhoven-Dobbe, Yvonne van der Meer, Abraham J. Koster, A. Mieke Mommaas, and Eric J. Snijder. 2008. “SARS-Coronavirus Replication Is Supported by a Reticulovesicular Network of Modified Endoplasmic Reticulum.” PLoS Biology 6 (9): e226.

Kumar, Purnima, Vithiagaran Gunalan, Boping Liu, Vincent T. K. Chow, Julian Druce, Chris Birch, Mike Catton, Burtram C. Fielding, Yee-Joo Tan, and Sunil K. Lal. 2007. “The Nonstructural Protein 8 (nsp8) of the SARS Coronavirus Interacts with Its ORF6 Accessory Protein.” Virology 366 (2): 293–303.

Kuo, Lili, and Paul S. Masters. 2002. “Genetic Evidence for a Structural Interaction between the Carboxy Termini of the Membrane and Nucleocapsid Proteins of Mouse Hepatitis Virus.” Journal of Virology 76 (10): 4987–99.

Kuo, L., and P. S. Masters. 2003. “The Small Envelope Protein E Is Not Essential for Murine Coronavirus Replication.” Journal of Virology. https://doi.org/10.1128/jvi.77.8.4597-4608.2003.

Laude, H., J. Gelfi, L. Lavenant, and B. Charley. 1992. “Single Amino Acid Changes in the Viral Glycoprotein M Affect Induction of Alpha Interferon by the Coronavirus Transmissible Gastroenteritis Virus.” Journal of Virology 66 (2): 743–49.

Lau, Susanna K. P., Patrick C. Y. Woo, Kenneth S. M. Li, Yi Huang, Hoi-Wah Tsoi, Beatrice H. L. Wong, Samson S. Y. Wong, Suet-Yi Leung, Kwok-Hung Chan, and Kwok-Yung Yuen. 2005. “Severe Acute Respiratory Syndrome Coronavirus-like Virus in Chinese Horseshoe Bats.” Proceedings of the National Academy of Sciences of the United States of America 102 (39): 14040–45.

Lehmann, Kathleen C., Anastasia Gulyaeva, Jessika C. Zevenhoven-Dobbe, George M. C. Janssen, Mark Ruben, Hermen S. Overkleeft, Peter A. van Veelen, et al. 2015. “Discovery of an Essential Nucleotidylating Activity Associated with a Newly Delineated Conserved Domain in the RNA Polymerase-Containing Protein of All Nidoviruses.” Nucleic Acids Research 43 (17): 8416–34.

Lei, Jian, Yuri Kusov, and Rolf Hilgenfeld. 2018. “Nsp3 of Coronaviruses: Structures and Functions of a Large Multi-Domain Protein.” Antiviral Research 149 (January): 58–74.

Lim, K. P., and D. X. Liu. 2001. “The Missing Link in Coronavirus Assembly. Retention of the Avian Coronavirus Infectious Bronchitis Virus Envelope Protein in the Pre-Golgi Compartments and Physical Interaction between the Envelope and Membrane Proteins.” The Journal of Biological Chemistry 276 (20): 17515–23.

Linding, Rune, Lars Juhl Jensen, Francesca Diella, Peer Bork, Toby J. Gibson, and Robert B. Russell. 2003. “Protein Disorder Prediction: Implications for Structural Proteomics.” Structure  11 (11): 1453–59.

Liu, Xiaorong, Puxian Fang, Liurong Fang, Yingying Hong, Xinyu Zhu, Dang Wang, Guiqing Peng, and Shaobo Xiao. 2019. “Porcine Deltacoronavirus nsp15 Antagonizes Interferon-β Production Independently of Its Endoribonuclease Activity.” Molecular Immunology. https://doi.org/10.1016/j.molimm.2019.07.003.

Li, Yan, Wahyu Surya, Stephanie Claudine, and Jaume Torres. 2014. “Structure of a Conserved Golgi Complex-Targeting Signal in Coronavirus Envelope Proteins.” The Journal of Biological Chemistry 289 (18): 12535–49.

Lu, Wei, Bo-Jian Zheng, Ke Xu, Wolfgang Schwarz, Lanying Du, Charlotte K. L. Wong, Jiadong Chen, Shuming Duan, Vincent Deubel, and Bing Sun. 2006. “Severe Acute Respiratory Syndrome-Associated Coronavirus 3a Protein Forms an Ion Channel and Modulates Virus Release.” Proceedings of the National Academy of Sciences of the United States of America 103 (33): 12540–45.

Maeda, Junko, Akihiko Maeda, and Shinji Makino. 1999. “Release of Coronavirus E Protein in Membrane Vesicles from Virus-Infected Cells and E Protein-Expressing Cells.” Virology. https://doi.org/10.1006/viro.1999.9955.

Ma, Yuanyuan, Lijie Wu, Neil Shaw, Yan Gao, Jin Wang, Yuna Sun, Zhiyong Lou, Liming Yan, Rongguang Zhang, and Zihe Rao. 2015. “Structural Basis and Functional Analysis of the SARS Coronavirus nsp14-nsp10 Complex.” Proceedings of the National Academy of Sciences of the United States of America 112 (30): 9436–41.

Meier, Christoph, A. Radu Aricescu, Rene Assenberg, Robin T. Aplin, Robert J. C. Gilbert, Jonathan M. Grimes, and David I. Stuart. 2006. “The Crystal Structure of ORF-9b, a Lipid Binding Protein from the SARS Coronavirus.” Structure  14 (7): 1157–65.

Miknis, Zachary J., Eric F. Donaldson, Timothy C. Umland, Ryan A. Rimmer, Ralph S. Baric, and L. Wayne Schultz. 2009. “Severe Acute Respiratory Syndrome Coronavirus nsp9 Dimerization Is Essential for Efficient Viral Growth.” Journal of Virology 83 (7): 3007–18.

Minakshi, Rinki, and Kartika Padhan. 2014. “The YXXΦ Motif within the Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) 3a Protein Is Crucial for Its Intracellular Transport.” Virology Journal 11 (April): 75.

Minakshi, Rinki, Kartika Padhan, Manjusha Rani, Nabab Khan, Faizan Ahmad, and Shahid Jameel. 2009. “The SARS Coronavirus 3a Protein Causes Endoplasmic Reticulum Stress and Induces Ligand-Independent Downregulation of the Type 1 Interferon Receptor.” PloS One 4 (12): e8342.

Minakshi, Rinki, Kartika Padhan, Safikur Rehman, Md Imtaiyaz Hassan, and Faizan Ahmad. 2014. “The SARS Coronavirus 3a Protein Binds Calcium in Its Cytoplasmic Domain.” Virus Research 191 (October): 180–83.

Moshynskyy, Igor, Sathiyanarayanan Viswanathan, Natalia Vasilenko, Vladislav Lobanov, Martin Petric, Lorne A. Babiuk, and Alexander N. Zakhartchouk. 2007. “Intracellular Localization of the SARS Coronavirus Protein 9b: Evidence of Active Export from the Nucleus.” Virus Research 127 (1): 116–21.

Muth, Doreen, Victor Max Corman, Hanna Roth, Tabea Binger, Ronald Dijkman, Lina Theresa Gottula, Florian Gloza-Rausch, et al. 2018. “Attenuation of Replication by a 29 Nucleotide Deletion in SARS-Coronavirus Acquired during the Early Stages of Human-to-Human Transmission.” Scientific Reports 8 (1): 15177.

Narayanan, K., and S. Makino. 2001. “Cooperation of an RNA Packaging Signal and a Viral Envelope Protein in Coronavirus RNA Packaging.” Journal of Virology. https://doi.org/10.1128/jvi.75.19.9059-9067.2001.

Narayanan, Krishna, Cheng Huang, Kumari Lokugamage, Wataru Kamitani, Tetsuro Ikegami, Chien-Te K. Tseng, and Shinji Makino. 2008. “Severe Acute Respiratory Syndrome Coronavirus nsp1 Suppresses Host Gene Expression, Including that of Type I Interferon, in Infected Cells.” Journal of Virology 82 (9): 4471–79.

Narayanan, Krishna, Sydney I. Ramirez, Kumari G. Lokugamage, and Shinji Makino. 2015. “Coronavirus Nonstructural Protein 1: Common and Distinct Functions in the Regulation of Host and Viral Gene Expression.” Virus Research. https://doi.org/10.1016/j.virusres.2014.11.019.

Nelson, Christopher A., Andrew Pekosz, Chung A. Lee, Michael S. Diamond, and Daved H. Fremont. 2005. “Structure and Intracellular Targeting of the SARS-Coronavirus Orf7a Accessory Protein.” Structure  13 (1): 75–85.

Netherton, Christopher L., and Tom Wileman. 2011. “Virus Factories, Double Membrane Vesicles and Viroplasm Generated in Animal Cells.” Current Opinion in Virology 1 (5): 381–87.

Neuman, Benjamin W., Gabriella Kiss, Andreas H. Kunding, David Bhella, M. Fazil Baksh, Stephen Connelly, Ben Droese, et al. 2011. “A Structural Analysis of M Protein in Coronavirus Assembly and Morphology.” Journal of Structural Biology 174 (1): 11–22.

Ng, K. H. L. 2005. “Pulmonary Artery Thrombosis in a Patient with Severe Acute Respiratory Syndrome.” Postgraduate Medical Journal. https://doi.org/10.1136/pgmj.2004.030049.

Nieto-Torres, Jose L., Marta L. Dediego, Enrique Alvarez, Jose M. Jiménez-Guardeño, Jose A. Regla-Nava, Mercedes Llorente, Leonor Kremer, Shen Shuo, and Luis Enjuanes. 2011. “Subcellular Location and Topology of Severe Acute Respiratory Syndrome Coronavirus Envelope Protein.” Virology 415 (2): 69–82.

Nieto-Torres, Jose L., Marta L. DeDiego, Carmina Verdiá-Báguena, Jose M. Jimenez-Guardeño, Jose A. Regla-Nava, Raul Fernandez-Delgado, Carlos Castaño-Rodriguez, et al. 2014. “Severe Acute Respiratory Syndrome Coronavirus Envelope Protein Ion Channel Activity Promotes Virus Fitness and Pathogenesis.” PLoS Pathogens 10 (5): e1004077.

Nukoolkarn, Veena, Vannajan Sanghiran Lee, Maturos Malaisree, Ornjira Aruksakulwong, and Supot Hannongbua. 2008. “Molecular Dynamic Simulations Analysis of Ritonavir and Lopinavir as SARS-CoV 3CL(pro) Inhibitors.” Journal of Theoretical Biology 254 (4): 861–67.

Obitsu, Saemi, Nursarat Ahmed, Hironori Nishitsuji, Atsuhiko Hasegawa, Ken-Ichi Nakahama, Ikuo Morita, Kazuo Nishigaki, Takaya Hayashi, Takao Masuda, and Mari Kannagi. 2009. “Potential Enhancement of Osteoclastogenesis by Severe Acute Respiratory Syndrome Coronavirus 3a/X1 Protein.” Archives of Virology. https://doi.org/10.1007/s00705-009-0472-z.

Oostra, M., C. A. M. de Haan, R. J. de Groot, and P. J. M. Rottier. 2006. “Glycosylation of the Severe Acute Respiratory Syndrome Coronavirus Triple-Spanning Membrane Proteins 3a and M.” Journal of Virology. https://doi.org/10.1128/jvi.80.5.2326-2336.2006.

Oostra, M., M. C. Hagemeijer, M. van Gent, C. P. J. Bekker, E. G. te Lintelo, P. J. M. Rottier, and C. A. M. de Haan. 2008. “Topology and Membrane Anchoring of the Coronavirus Replication Complex: Not All Hydrophobic Domains of nsp3 and nsp6 Are Membrane Spanning.” Journal of Virology. https://doi.org/10.1128/jvi.01219-08.

Oostra, M., E. G. te Lintelo, M. Deijs, M. H. Verheije, P. J. M. Rottier, and C. A. M. de Haan. 2007. “Localization and Membrane Topology of Coronavirus Nonstructural Protein 4: Involvement of the Early Secretory Pathway in Replication.” Journal of Virology 81 (22): 12323–36.

Pacciarini, Filippo, Silvia Ghezzi, Filippo Canducci, Amy Sims, Michela Sampaolo, Elena Ferioli, Massimo Clementi, et al. 2008. “Persistent Replication of Severe Acute Respiratory Syndrome Coronavirus in Human Tubular Kidney Cells Selects for Adaptive Mutations in the Membrane Protein.” Journal of Virology 82 (11): 5137–44.

Padhan, Kartika, Rinki Minakshi, Mohammad Aatif Bin Towheed, and Shahid Jameel. 2008. “Severe Acute Respiratory Syndrome Coronavirus 3a Protein Activates the Mitochondrial Death Pathway through p38 MAP Kinase Activation.” The Journal of General Virology 89 (Pt 8): 1960–69.

Padhan, Kartika, Charu Tanwar, Amjad Hussain, Pui Yan Hui, Man Yan Lee, Chung Yan Cheung, Joseph Sriyal Malik Peiris, and Shahid Jameel. 2007. “Severe Acute Respiratory Syndrome Coronavirus Orf3a Protein Interacts with Caveolin.” The Journal of General Virology 88 (Pt 11): 3067–77.

Pan, Ji ’an, Xiaoxue Peng, Yajing Gao, Zhilin Li, Xiaolu Lu, Yingzhao Chen, Musarat Ishaq, et al. 2008. “Genome-Wide Analysis of Protein-Protein Interactions and Involvement of Viral Proteins in SARS-CoV Replication.” PloS One 3 (10): e3299.

Pekosz, Andrew, Scott R. Schaecher, Michael S. Diamond, Daved H. Fremont, Amy C. Sims, and Ralph S. Baric. 2006. “Structure, Expression, and Intracellular Localization of the SARS-CoV Accessory Proteins 7a and 7b.” Advances in Experimental Medicine and Biology 581: 115–20.

Perlman, Stanley. 2011. “Faculty of 1000 Evaluation for Ribose 2’-O-Methylation Provides a Molecular Signature for the Distinction of Self and Non-Self mRNA Dependent on the RNA Sensor Mda5.” F1000 – Post-Publication Peer Review of the Biomedical Literature. https://doi.org/10.3410/f.7927957.8287054.

Perlman, Stanley, and Jason Netland. 2009. “Coronaviruses Post-SARS: Update on Replication and Pathogenesis.” Nature Reviews. Microbiology 7 (6): 439–50.

Pewe, Lecia, Haixia Zhou, Jason Netland, Chandra Tangudu, Heidi Olivares, Lei Shi, Dwight Look, Thomas Gallagher, and Stanley Perlman. 2005. “A Severe Acute Respiratory Syndrome-Associated Coronavirus-Specific Protein Enhances Virulence of an Attenuated Murine Coronavirus.” Journal of Virology 79 (17): 11335–42.

Ponnusamy, Rajesh, Ralf Moll, Thomas Weimar, Jeroen R. Mesters, and Rolf Hilgenfeld. 2008. “Variable Oligomerization Modes in Coronavirus Non-Structural Protein 9.” Journal of Molecular Biology 383 (5): 1081–96.

Prentice, Erik, Josephine McAuliffe, Xiaotao Lu, Kanta Subbarao, and Mark R. Denison. 2004. “Identification and Characterization of Severe Acute Respiratory Syndrome Coronavirus Replicase Proteins.” Journal of Virology 78 (18): 9977–86.

Rota, Paul A., M. Steven Oberste, Stephan S. Monroe, W. Allan Nix, Ray Campagnoli, Joseph P. Icenogle, Silvia Peñaranda, et al. 2003. “Characterization of a Novel Coronavirus Associated with Severe Acute Respiratory Syndrome.” Science300 (5624): 1394–99.

Saikatendu, Kumar Singh, Jeremiah S. Joseph, Vanitha Subramanian, Tom Clayton, Mark Griffith, Kin Moy, Jeffrey Velasquez, et al. 2005. “Structural Basis of Severe Acute Respiratory Syndrome Coronavirus ADP-Ribose-1″-Phosphate Dephosphorylation by a Conserved Domain of nsP3.” Structure. https://doi.org/10.1016/j.str.2005.07.022.

Sakai, Yusuke, Kengo Kawachi, Yutaka Terada, Hiroko Omori, Yoshiharu Matsuura, and Wataru Kamitani. 2017. “Two-Amino Acids Change in the nsp4 of SARS Coronavirus Abolishes Viral Replication.” Virology 510 (October): 165–74.

Sauter, Daniel, Anke Specht, and Frank Kirchhoff. 2010. “Tetherin: Holding on and Letting Go.” Cell 141 (3): 392–98.

Sawicki, Stanley G., Dorothea L. Sawicki, Diane Younker, Yvonne Meyer, Volker Thiel, Helen Stokes, and Stuart G. Siddell. 2005. “Functional and Genetic Analysis of Coronavirus Replicase-Transcriptase Proteins.” PLoS Pathogens 1 (4): e39.

———. 2006. “Correction: Functional and Genetic Analysis of Coronavirus Replicase-Transcriptase Proteins.” PLoS Pathogens. https://doi.org/10.1371/journal.ppat.0020017.

Schaecher, Scott R., Michael S. Diamond, and Andrew Pekosz. 2008. “The Transmembrane Domain of the Severe Acute Respiratory Syndrome Coronavirus ORF7b Protein Is Necessary and Sufficient for Its Retention in the Golgi Complex.” Journal of Virology 82 (19): 9477–91.

Schaecher, Scott R., Jason M. Mackenzie, and Andrew Pekosz. 2007. “The ORF7b Protein of Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) Is Expressed in Virus-Infected Cells and Incorporated into SARS-CoV Particles.” Journal of Virology 81 (2): 718–31.

Schaecher, Scott R., Erin Touchette, Jill Schriewer, R. Mark Buller, and Andrew Pekosz. 2007. “Severe Acute Respiratory Syndrome Coronavirus Gene 7 Products Contribute to Virus-Induced Apoptosis.” Journal of Virology 81 (20): 11054–68.

Schoeman, Dewald, and Burtram C. Fielding. 2019. “Coronavirus Envelope Protein: Current Knowledge.” Virology Journal 16 (1): 69.

Serrano, Pedro, Margaret A. Johnson, Marcius S. Almeida, Reto Horst, Torsten Herrmann, Jeremiah S. Joseph, Benjamin W. Neuman, et al. 2007. “Nuclear Magnetic Resonance Structure of the N-Terminal Domain of Nonstructural Protein 3 from the Severe Acute Respiratory Syndrome Coronavirus.” Journal of Virology 81 (21): 12049–60.

Seybert, Anja, Clara C. Posthuma, Leonie C. van Dinten, Eric J. Snijder, Alexander E. Gorbalenya, and John Ziebuhr. 2005. “A Complex Zinc Finger Controls the Enzymatic Activities of Nidovirus Helicases.” Journal of Virology 79 (2): 696–704.

Sharma, Kulbhushan, Milan Surjit, Namita Satija, Boping Liu, Vincent T. K. Chow, and Sunil K. Lal. 2007. “The 3a Accessory Protein of SARS Coronavirus Specifically Interacts with the 5’UTR of Its Genomic RNA, Using a Unique 75 Amino Acid Interaction Domain.” Biochemistry 46 (22): 6488–99.

Shen, Shuo, Pi-Shiu Lin, Yu-Chan Chao, Aihua Zhang, Xiaoming Yang, Seng Gee Lim, Wanjin Hong, and Yee-Joo Tan. 2005. “The Severe Acute Respiratory Syndrome Coronavirus 3a Is a Novel Structural Protein.” Biochemical and Biophysical Research Communications 330 (1): 286–92.

Shi, Chong-Shan, Hai-Yan Qi, Cedric Boularan, Ning-Na Huang, Mones Abu-Asab, James H. Shelhamer, and John H. Kehrl. 2014. “SARS-Coronavirus Open Reading Frame-9b Suppresses Innate Immunity by Targeting Mitochondria and the MAVS/TRAF3/TRAF6 Signalosome.” Journal of Immunology  193 (6): 3080–89.

Siu, Kam-Leung, Kin-Hang Kok, Ming-Him James Ng, Vincent K. M. Poon, Kwok-Yung Yuen, Bo-Jian Zheng, and Dong-Yan Jin. 2009. “Severe Acute Respiratory Syndrome Coronavirus M Protein Inhibits Type I Interferon Production by Impeding the Formation of TRAF3.TANK.TBK1/IKKepsilon Complex.” The Journal of Biological Chemistry 284 (24): 16202–9.

Siu, Kam-Leung, Kit-San Yuen, Carlos Castaño-Rodriguez, Zi-Wei Ye, Man-Lung Yeung, Sin-Yee Fung, Shuofeng Yuan, et al. 2019. “Severe Acute Respiratory Syndrome Coronavirus ORF3a Protein Activates the NLRP3 Inflammasome by Promoting TRAF3-Dependent Ubiquitination of ASC.” FASEB Journal: Official Publication of the Federation of American Societies for Experimental Biology 33 (8): 8865–77.

Smith, Everett Clinton, James Brett Case, Hervé Blanc, Ofer Isakov, Noam Shomron, Marco Vignuzzi, and Mark R. Denison. 2015. “Mutations in Coronavirus Nonstructural Protein 10 Decrease Virus Replication Fidelity.” Journal of Virology 89 (12): 6418–26.

Smith, Everett Clinton, and Mark R. Denison. 2013. “Coronaviruses as DNA Wannabes: A New Model for the Regulation of RNA Virus Replication Fidelity.” PLoS Pathogens 9 (12): e1003760.

Sparks, Jennifer S., Xiaotao Lu, and Mark R. Denison. 2007. “Genetic Analysis of Murine Hepatitis Virus nsp4 in Virus Replication.” Journal of Virology 81 (22): 12554–63.

Stokes, Helen L., Surendranath Baliji, Chang Guo Hui, Stanley G. Sawicki, Susan C. Baker, and Stuart G. Siddell. 2010. “A New Cistron in the Murine Hepatitis Virus Replicase Gene.” Journal of Virology 84 (19): 10148–58.

Subissi, Lorenzo, Clara C. Posthuma, Axelle Collet, Jessika C. Zevenhoven-Dobbe, Alexander E. Gorbalenya, Etienne Decroly, Eric J. Snijder, Bruno Canard, and Isabelle Imbert. 2014. “One Severe Acute Respiratory Syndrome Coronavirus Protein Complex Integrates Processive RNA Polymerase and Exonuclease Activities.” Proceedings of the National Academy of Sciences of the United States of America 111 (37): E3900–3909.

Su, Dan, Zhiyong Lou, Fei Sun, Yujia Zhai, Haitao Yang, Rongguang Zhang, Andrzej Joachimiak, Xuejun C. Zhang, Mark Bartlam, and Zihe Rao. 2006. “Dodecamer Structure of Severe Acute Respiratory Syndrome Coronavirus Nonstructural Protein nsp10.” Journal of Virology 80 (16): 7902–8.

Surjit, Milan, Boping Liu, Vincent T. K. Chow, and Sunil K. Lal. 2006. “The Nucleocapsid Protein of Severe Acute Respiratory Syndrome-Coronavirus Inhibits the Activity of Cyclin-Cyclin-Dependent Kinase Complex and Blocks S Phase Progression in Mammalian Cells.” The Journal of Biological Chemistry 281 (16): 10669–81.

Sutton, Geoff, Elizabeth Fry, Lester Carter, Sarah Sainsbury, Tom Walter, Joanne Nettleship, Nick Berrow, et al. 2004. “The nsp9 Replicase Protein of SARS-Coronavirus, Structure and Functional Insights.” Structure  12 (2): 341–53.

Taiaroa, George, Daniel Rawlinson, Leo Featherstone, Miranda Pitt, Leon Caly, Julian Druce, Damian Purcell, et al. n.d. “Direct RNA Sequencing and Early Evolution of SARS-CoV-2.” https://doi.org/10.1101/2020.03.05.976167.

Tan, Yee-Joo, Eileen Teng, Shuo Shen, Timothy H. P. Tan, Phuay-Yee Goh, Burtram C. Fielding, Eng-Eong Ooi, Hwee-Cheng Tan, Seng Gee Lim, and Wanjin Hong. 2004. “A Novel Severe Acute Respiratory Syndrome Coronavirus Protein, U274, Is Transported to the Cell Surface and Undergoes Endocytosis.” Journal of Virology 78 (13): 6723–34.

Tan, Yee-Joo, Puay-Yoke Tham, Daphne Z. L. Chan, Chih-Fong Chou, Shuo Shen, Burtram C. Fielding, Timothy H. P. Tan, Seng Gee Lim, and Wanjin Hong. 2005. “The Severe Acute Respiratory Syndrome Coronavirus 3a Protein up-Regulates Expression of Fibrinogen in Lung Epithelial Cells.” Journal of Virology 79 (15): 10083–87.

Taylor, Justin K., Christopher M. Coleman, Sandra Postel, Jeanne M. Sisk, John G. Bernbaum, Thiagarajan Venkataraman, Eric J. Sundberg, and Matthew B. Frieman. 2015. “Severe Acute Respiratory Syndrome Coronavirus ORF7a Inhibits Bone Marrow Stromal Antigen 2 Virion Tethering through a Novel Mechanism of Glycosylation Interference.” Journal of Virology 89 (23): 11820–33.

Teoh, Kim-Tat, Yu-Lam Siu, Wing-Lim Chan, Marc A. Schlüter, Chia-Jen Liu, J. S. Malik Peiris, Roberto Bruzzone, Benjamin Margolis, and Béatrice Nal. 2010. “The SARS Coronavirus E Protein Interacts with PALS1 and Alters Tight Junction Formation and Epithelial Morphogenesis.” Molecular Biology of the Cell. https://doi.org/10.1091/mbc.e10-04-0338.

Tseng, Ying-Tzu, Chia-Hui Chang, Shiu-Mei Wang, Kuo-Jung Huang, and Chin-Tien Wang. 2013. “Identifying SARS-CoV Membrane Protein Amino Acid Residues Linked to Virus-like Particle Assembly.” PloS One 8 (5): e64013.

Ulferts, Rachel, and John Ziebuhr. 2011. “Nidovirus Ribonucleases: Structures and Functions in Viral Replication.” RNA Biology 8 (2): 295–304.

Vennema, H., G. J. Godeke, J. W. Rossen, W. F. Voorhout, M. C. Horzinek, D. J. Opstelten, and P. J. Rottier. 1996. “Nucleocapsid-Independent Assembly of Coronavirus-like Particles by Co-Expression of Viral Envelope Protein Genes.” The EMBO Journal 15 (8): 2020–28.

Wang, Yi, Ying Sun, Andong Wu, Shan Xu, Ruangang Pan, Cong Zeng, Xu Jin, et al. 2015. “Coronavirus nsp10/nsp16 Methyltransferase Can Be Targeted by nsp10-Derived Peptide In Vitro and In Vivo To Reduce Replication and Pathogenesis.” Journal of Virology 89 (16): 8416–27.

Wang, Zai, Jian-Dong Huang, Kin-Ling Wong, Pei-Gang Wang, Hao-Jie Zhang, Julian A. Tanner, Ottavia Spiga, Andrea Bernini, Bo-Jian Zheng, and Neri Niccolai. 2011. “On the Mechanisms of Bananin Activity against Severe Acute Respiratory Syndrome Coronavirus.” The FEBS Journal 278 (2): 383–89.

Yang, Litao, Hui Peng, Zhaoling Zhu, Gang Li, Zitong Huang, Zhixin Zhao, Richard A. Koup, Robert T. Bailer, and Changyou Wu. 2007. “Persistent Memory CD4+ and CD8+ T-Cell Responses in Recovered Severe Acute Respiratory Syndrome (SARS) Patients to SARS Coronavirus M Antigen.” The Journal of General Virology 88 (Pt 10): 2740–48.

Yang, Yu, Zeyu Xiong, Sheng Zhang, Yan Yan, Justin Nguyen, Bernard Ng, Huifang Lu, et al. 2005. “Bcl-xL Inhibits T-Cell Apoptosis Induced by Expression of SARS Coronavirus E Protein in the Absence of Growth Factors.” Biochemical Journal. https://doi.org/10.1042/bj20050698.

Yount, Boyd, Rhonda S. Roberts, Amy C. Sims, Damon Deming, Matthew B. Frieman, Jennifer Sparks, Mark R. Denison, Nancy Davis, and Ralph S. Baric. 2005. “Severe Acute Respiratory Syndrome Coronavirus Group-Specific Open Reading Frames Encode Nonessential Functions for Replication in Cell Cultures and Mice.” Journal of Virology 79 (23): 14909–22.

Yuan, Xiaoling, Jianyong Li, Yajun Shan, Zhen Yang, Zhenhu Zhao, Bo Chen, Zhenyu Yao, et al. 2005. “Subcellular Localization and Membrane Association of SARS-CoV 3a Protein.” Virus Research 109 (2): 191–202.

Yuan, Xiaoling, Zhenyu Yao, Jie Wu, Yusen Zhou, Yajun Shan, Bo Dong, Zhenhu Zhao, Ping Hua, Jiapei Chen, and Yuwen Cong. 2007. “G1 Phase Cell Cycle Arrest Induced by SARS-CoV 3a Protein via the Cyclin D3/pRb Pathway.” American Journal of Respiratory Cell and Molecular Biology 37 (1): 9–19.

Zeng, Rong, Rui-Fu Yang, Mu-De Shi, Man-Rong Jiang, You-Hua Xie, Hong-Qiang Ruan, Xiao-Sheng Jiang, et al. 2004. “Characterization of the 3a Protein of SARS-Associated Coronavirus in Infected Vero E6 Cells and SARS Patients.” Journal of Molecular Biology 341 (1): 271–79.

Zeng, Zhe, Feng Deng, Ke Shi, Gang Ye, Gang Wang, Liurong Fang, Shaobo Xiao, Zhenfang Fu, and Guiqing Peng. 2018. “Dimerization of Coronavirus nsp9 with Diverse Modes Enhances Its Nucleic Acid Binding Affinity.” Journal of Virology 92 (17). https://doi.org/10.1128/JVI.00692-18.

Zhai, Yujia, Fei Sun, Xuemei Li, Hai Pang, Xiaoling Xu, Mark Bartlam, and Zihe Rao. 2005. “Insights into SARS-CoV Transcription and Replication from the Structure of the nsp7–nsp8 Hexadecamer.” Nature Structural & Molecular Biology 12 (11): 980–86.

Zhang, Linlin, Daizong Lin, Yuri Kusov, Yong Nian, Qingjun Ma, Jiang Wang, Albrecht von Brunn, et al. 2020. “α-Ketoamides as Broad-Spectrum Inhibitors of Coronavirus and Enterovirus Replication: Structure-Based Design, Synthesis, and Activity Assessment.” Journal of Medicinal Chemistry, February. https://doi.org/10.1021/acs.jmedchem.9b01828.

Zhang, Linlin, Daizong Lin, Xinyuanyuan Sun, Ute Curth, Christian Drosten, Lucie Sauerhering, Stephan Becker, Katharina Rox, and Rolf Hilgenfeld. 2020. “Crystal Structure of SARS-CoV-2 Main Protease Provides a Basis for Design of Improved α-Ketoamide Inhibitors.” Science, March. https://doi.org/10.1126/science.abb3405.

Zhao, Jincun, Ana Falcón, Haixia Zhou, Jason Netland, Luis Enjuanes, Pilar Pérez Breña, and Stanley Perlman. 2009. “Severe Acute Respiratory Syndrome Coronavirus Protein 6 Is Required for Optimal Replication.” Journal of Virology83 (5): 2368–73.

Zhou, Haixia, Debra Ferraro, Jincun Zhao, Snawar Hussain, Jianqiang Shao, Jonathan Trujillo, Jason Netland, Thomas Gallagher, and Stanley Perlman. 2010. “The N-Terminal Region of Severe Acute Respiratory Syndrome Coronavirus Protein 6 Induces Membrane Rearrangement and Enhances Virus Replication.” Journal of Virology 84 (7): 3542–51.

Ziebuhr, J., E. J. Snijder, and A. E. Gorbalenya. 2000. “Virus-Encoded Proteinases and Proteolytic Processing in the Nidovirales.” The Journal of General Virology 81 (Pt 4): 853–79.

Zuo, Y., and M. P. Deutscher. 2001. “Exoribonuclease Superfamilies: Structural Analysis and Phylogenetic Distribution.” Nucleic Acids Research 29 (5): 1017–26.

Züst, Roland, Luisa Cervantes-Barragán, Thomas Kuri, Gjon Blakqori, Friedemann Weber, Burkhard Ludewig, and Volker Thiel. 2007. “Coronavirus Non-Structural Protein 1 Is a Major Pathogenicity Factor: Implications for the Rational Design of Coronavirus Vaccines.” PLoS Pathogens 3 (8): e109.